Plato Scientific AI

Multi-agent AI scientist — data to peer-reviewable papers
31 nodes

discovering.app

Plato Scientific AI

05

Plato converts experimental inputs into literature-grounded research end-to-end: idea generation, methodology design, executable analysis, LaTeX manuscript writing, domain-routed multi-source retrieval (arXiv, PubMed, Europe PMC, OpenAlex, Crossref, Semantic Scholar), citation validation, reviewer-panel revision loops, reproducibility manifests, and LangFuse observability — dashboard at discovering.app (Next.js 15 + FastAPI SSE backend).

Project context05

Problem

Scientific automation usually stops at drafting prose or summarizing papers. Real research workflows need literature retrieval, method design, executable analysis, citation validation, reviewer critique, revision loops, and reproducibility records before the output can be trusted.

Solution

Plato structures the research pipeline into specialist stages that move from idea to method, results, manuscript, reviewer feedback, and reproducibility manifest. Retrieval is routed across scholarly sources while the dashboard streams reasoning and progress from the backend.

Challenges

The difficult parts are grounding claims to citations, avoiding hallucinated references, preserving intermediate evidence, coordinating multiple agent stages, and making generated analysis reproducible enough for a human scientist to audit.

Innovation

The system frames an AI scientist as an observable workflow, not a single black-box model. It pairs multi-source retrieval with citation validation, reviewer-panel loops, and stage-specific tools that produce a paper-like artifact with traceable evidence.

Domain expertise

This demonstrates Stefan's domain fluency in AI research systems, scientific RAG, autonomous workflow design, FastAPI streaming, LangGraph-style orchestration, scholarly source routing, and reproducibility expectations.

Case study evidence11

Outcomes

  • Moves AI research support from summary generation to an end-to-end scientific workflow with methods, analysis, manuscript, and review loops.
  • Gives researchers a way to inspect citations, claims, reviewer critiques, and reproducibility manifests instead of trusting a final answer.
  • Positions the system as a lab-grade research copilot rather than a generic writing assistant.

Architecture decisions

  • Stage-specific agents isolate idea generation, methods, analysis, manuscript writing, and critique.
  • Retrieval routes across scholarly databases with validation checkpoints before claims enter the manuscript.
  • SSE dashboard streaming makes long-running research automation observable while it executes.

Domain expertise signals

Scientific RAGCitation validationReproducibilityReviewer loopsResearch operations
Technical deep dive09

Plato is strongest when read as research operations infrastructure. It turns literature search, method design, executable analysis, citation validation, reviewer critique, and reproducibility into a staged system rather than a single manuscript prompt.

Claim lifecycle

The workflow has to track how claims originate, which sources support them, whether citations resolve, and how reviewer feedback changes the manuscript. That is the difference between a paper generator and an auditable research system.

Retrieval composition

Different scholarly sources answer different questions. Routing across arXiv, PubMed, Europe PMC, OpenAlex, Crossref, and Semantic Scholar lets the system separate prior work, biomedical evidence, citation metadata, and related-paper discovery.

Reviewer loop

The reviewer panel gives the system a way to criticize novelty, methods, statistics, and writing before final output. That loop matters because scientific output needs adversarial pressure before it becomes credible.

Reproducibility layer

A serious scientific agent needs manifests, model versions, source ids, cost records, and evidence matrices. Those artifacts make the generated paper inspectable after the run, not just readable at the end.

What this proves

  • Stage-specific agents for idea, method, results, paper, and review
  • Citation validation before final manuscript trust
  • Evidence matrices linking claims to source spans
  • Dashboard streaming for long-running research automation
8+retrieval adapters
4review axes
3executor backends
1manifest per run
2domains shipped
revision iters (bounded)
Technology stack04
Python

Python 3.12+

LangGraph orchestration, retrieval adapters, and scientific executors share one typed Python boundary.

LG

LangGraph

Paper pipeline nodes (idea, method, results, paper) compose as explicit graphs with checkpoint/resume.

Next.js

Next.js 15

Plato Dashboard frontend at discovering.app — stage cards, agent log streams, and cost tracking over SSE.

FastAPI

FastAPI

Dashboard gateway runs each Plato stage in subprocess workers and streams reasoning tokens to the UI.

Tools implemented09

get_idea / get_method / get_results / get_paper

End-to-end pipeline from data description to journal-styled LaTeX manuscript.

Plato Dashboard

Next.js 15 + FastAPI SSE workspace at discovering.app with projects, models, costs, and activity routes.

Retrieval orchestrator

Domain-routed adapters (arXiv, PubMed, Europe PMC, OpenAlex, Crossref, Semantic Scholar) with backoff and circuit breakers.

Citation validator

Resolves every reference against Crossref + Retraction Watch; emits validation_report.json.

Evidence matrix

Links atomic claims to source quote spans — evidence_matrix.jsonl per run.

Reviewer panel + revision loop

Methodology, statistics, novelty, writing axes drive bounded redrafts.

Pluggable executors

Modal GPU, E2B sandbox, or local Jupyter run analysis per domain profile.

Reproducibility manifest

manifest.json with git sha, model versions, source ids, tokens, and cost.

Autonomous research loop

plato loop iterates under wall-clock and cost budgets with regression revert.

Stefan Creadore · @Eldergenixproduction agent systems mapped end to end